4Y5V Diabody 305 complex with EpoR date
authors Moraga, I., Guo, F., Ozkan, E., Jude, K.M., Garcia, K.C.
compound source
symmetry
R_factor
R_Free 0.2288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand GOL, PEG, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, C, I


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (445 Kb) [Save to disk]
  • Biological Unit Coordinates (4y5v.pdb1.gz) 292 Kb
  • Biological Unit Coordinates (4y5v.pdb2.gz) 281 Kb
  • LPC: Ligand-Protein Contacts for 4Y5V
  • CSU: Contacts of Structural Units for 4Y5V
  • Structure Factors (724 Kb)
  • Retrieve 4Y5V in mmCIF format [Save to disk]
  • Re-refined 4y5v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Y5V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Y5V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Y5V, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y5v_H] [4y5v_D] [4y5v_I] [4y5v] [4y5v_C] [4y5v_E] [4y5v_B] [4y5v_A] [4y5v_F] [4y5v_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4Y5V: [FN3] [IGv ] by SMART
  • Other resources with information on 4Y5V
  • Community annotation for 4Y5V at PDBWiki (http://pdbwiki.org)

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