4Y8K		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CL, DCL, MES, MG, POL	enzyme
Gene Ontology	Chain Function Process Component A, O proteasome core complex, alp... B, P proteasome core complex, alp... C, Q D, R proteasome core complex, alp... E, S proteasome core complex, alp... F, T proteasome core complex, alp... G, U proteasome core complex, alp... J, X endopeptidase activator acti... proteasome core complex, bet... K, Y, H, V M, a proteasome core complex, bet... N, b proteasome core complex, bet... W, I endopeptidase activator acti... proteasome core complex, bet... Z, L
Primary reference	Systematic Analyses of Substrate Preferences of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors., Huber EM, de Bruin G, Heinemeyer W, Paniagua Soriano G, Overkleeft HS, Groll M, J Am Chem Soc. 2015 Jun 11. PMID:26020686

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2055 Kb) [Save to disk] Biological Unit Coordinates (4y8k.pdb1.gz) 2042 Kb LPC: Ligand-Protein Contacts for 4Y8K CSU: Contacts of Structural Units for 4Y8K Structure Factors (5987 Kb) Retrieve 4Y8K in mmCIF format [Save to disk] Re-refined 4y8k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4Y8K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4y8k] [4y8k_A] [4y8k_B] [4y8k_C] [4y8k_D] [4y8k_E] [4y8k_F] [4y8k_G] [4y8k_H] [4y8k_I] [4y8k_J] [4y8k_K] [4y8k_L] [4y8k_M] [4y8k_N] [4y8k_O] [4y8k_P] [4y8k_Q] [4y8k_R] [4y8k_S] [4y8k_T] [4y8k_U] [4y8k_V] [4y8k_W] [4y8k_X] [4y8k_Y] [4y8k_Z] [4y8k_a] [4y8k_b] [4y8k_c] [4y8k_d] [4y8k_e] [4y8k_f] SWISS-PROT database: Domain found in 4Y8K: [Proteasome_A_N ] by SMART

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