4Y97 Crystal Structure of human Pol alpha B-subunit in complex with C-terminal domain of catalytic subunit date
authors Suwa, Y., Gu, J., Baranovskiy, A.G., Babayeva, N.D., Tahirov, T.H.
compound source
symmetry
R_factor
R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.51
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G


F, B, H, D


Primary referenceCrystal Structure of the Human Pol alpha B Subunit in Complex with the C-terminal Domain of the Catalytic Subunit., Suwa Y, Gu J, Baranovskiy AG, Babayeva ND, Pavlov YI, Tahirov TH, J Biol Chem. 2015 Apr 6. pii: jbc.M115.649954. PMID:25847248
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (402 Kb) [Save to disk]
  • Biological Unit Coordinates (4y97.pdb1.gz) 103 Kb
  • Biological Unit Coordinates (4y97.pdb2.gz) 103 Kb
  • Biological Unit Coordinates (4y97.pdb3.gz) 103 Kb
  • Biological Unit Coordinates (4y97.pdb4.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 4Y97
  • CSU: Contacts of Structural Units for 4Y97
  • Structure Factors (1376 Kb)
  • Retrieve 4Y97 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Y97 from S2C, [Save to disk]
  • Re-refined 4y97 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Y97 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Y97
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Y97, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y97_B] [4y97_C] [4y97_G] [4y97_E] [4y97_F] [4y97] [4y97_A] [4y97_H] [4y97_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4Y97
  • Community annotation for 4Y97 at PDBWiki (http://pdbwiki.org)

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