4YBF Aspartic Proteinase Sapp2 Secreted from Candida Parapsilosis at 1.25 A Resolution date
authors Dostal, J., Hruskova-Heidingsfeldova, O., Rezacova, P., Brynda, J., Mareckova, L., Pichova, I.
compound source
symmetry
R_factor
R_Free 0.1745
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.24
ligand PEG enzyme
Gene CPAR2
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAtomic resolution crystal structure of Sapp2p, a secreted aspartic protease from Candida parapsilosis., Dostal J, Pecina A, Hruskova-Heidingsfeldova O, Mareckova L, Pichova I, Rezacova P, Lepsik M, Brynda J, Acta Crystallogr D Biol Crystallogr. 2015 Dec 1;71(Pt 12):2494-504. doi:, 10.1107/S1399004715019392. Epub 2015 Nov 27. PMID:26627656
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (4ybf.pdb1.gz) 113 Kb
  • LPC: Ligand-Protein Contacts for 4YBF
  • CSU: Contacts of Structural Units for 4YBF
  • Structure Factors (1472 Kb)
  • Retrieve 4YBF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YBF from S2C, [Save to disk]
  • Re-refined 4ybf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YBF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YBF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ybf_A] [4ybf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4YBF
  • Community annotation for 4YBF at PDBWiki (http://pdbwiki.org)

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