4YBI Crystal structure of BACE with amino thiazine inhibitor LY2811376 date
authors Timm, D.E.
compound source
symmetry
R_factor
R_Free 0.22253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.84
ligand 4B2, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRobust central reduction of amyloid-beta in humans with an orally available, non-peptidic beta-secretase inhibitor., May PC, Dean RA, Lowe SL, Martenyi F, Sheehan SM, Boggs LN, Monk SA, Mathes BM, Mergott DJ, Watson BM, Stout SL, Timm DE, Smith Labell E, Gonzales CR, Nakano M, Jhee SS, Yen M, Ereshefsky L, Lindstrom TD, Calligaro DO, Cocke PJ, Greg Hall D, Friedrich S, Citron M, Audia JE, J Neurosci. 2011 Nov 16;31(46):16507-16. doi: 10.1523/JNEUROSCI.3647-11.2011. PMID:22090477
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (4ybi.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (4ybi.pdb2.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 4YBI
  • CSU: Contacts of Structural Units for 4YBI
  • Structure Factors (1761 Kb)
  • Retrieve 4YBI in mmCIF format [Save to disk]
  • Re-refined 4ybi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YBI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4YBI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4YBI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ybi] [4ybi_A] [4ybi_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4YBI
  • Community annotation for 4YBI at PDBWiki (http://pdbwiki.org)

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