4YC4 Crystal structure of phosphatidyl inositol 4-kinase II alpha in complex with nucleotide analog date
authors Klima, M., Boura, E.
compound source
symmetry
R_factor
R_Free 0.2558
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.58
ligand ADP, M59 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe high-resolution crystal structure of phosphatidylinositol 4-kinase IIbeta and the crystal structure of phosphatidylinositol 4-kinase IIalpha containing a nucleoside analogue provide a structural basis for isoform-specific inhibitor design., Klima M, Baumlova A, Chalupska D, Hrebabecky H, Dejmek M, Nencka R, Boura E, Acta Crystallogr D Biol Crystallogr. 2015 Jul 1;71(Pt 7):1555-63. doi:, 10.1107/S1399004715009505. Epub 2015 Jun 30. PMID:26143926
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (4yc4.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 4YC4
  • CSU: Contacts of Structural Units for 4YC4
  • Structure Factors (174 Kb)
  • Retrieve 4YC4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YC4 from S2C, [Save to disk]
  • Re-refined 4yc4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YC4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4YC4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yc4] [4yc4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4YC4
  • Community annotation for 4YC4 at PDBWiki (http://pdbwiki.org)

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