4YC5 Beta1 synthetic solenoid protein date
authors Murray, J.W.
compound source
symmetry
R_factor
R_Free 0.1845
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.75
ligand CL enzyme
Primary referenceSynthetic beta-solenoid proteins with the fragment-free computational design of a beta-hairpin extension., MacDonald JT, Kabasakal BV, Godding D, Kraatz S, Henderson L, Barber J, Freemont PS, Murray JW, Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):10346-51. doi:, 10.1073/pnas.1525308113. Epub 2016 Aug 29. PMID:27573845
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (4yc5.pdb1.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 4YC5
  • CSU: Contacts of Structural Units for 4YC5
  • Structure Factors (588 Kb)
  • Retrieve 4YC5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YC5 from S2C, [Save to disk]
  • Re-refined 4yc5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YC5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4YC5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4yc5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yc5] [4yc5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4YC5
  • Community annotation for 4YC5 at PDBWiki (http://pdbwiki.org)

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