4YCG Pro-bone morphogenetic protein 9 date
authors Mi, L.Z., Brown, C.T., Gao, Y., Tian, Y., Le, V., Walz, T., Springer, T.A.
compound source
symmetry
R_factor
R_Free 0.2295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.30
ligand NAG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, C


Primary referenceStructure of bone morphogenetic protein 9 procomplex., Mi LZ, Brown CT, Gao Y, Tian Y, Le VQ, Walz T, Springer TA, Proc Natl Acad Sci U S A. 2015 Mar 24;112(12):3710-5. doi:, 10.1073/pnas.1501303112. Epub 2015 Mar 6. PMID:25751889
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (221 Kb) [Save to disk]
  • Biological Unit Coordinates (4ycg.pdb1.gz) 212 Kb
  • LPC: Ligand-Protein Contacts for 4YCG
  • CSU: Contacts of Structural Units for 4YCG
  • Structure Factors (870 Kb)
  • Retrieve 4YCG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YCG from S2C, [Save to disk]
  • Re-refined 4ycg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YCG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4YCG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4YCG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ycg] [4ycg_D] [4ycg_A] [4ycg_B] [4ycg_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4YCG: [TGFB ] by SMART
  • Other resources with information on 4YCG
  • Community annotation for 4YCG at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science