4YDL		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	EPE, NAG, PCA, SO4	enzyme
Gene Ontology	Chain Function Process Component G, A
Primary reference	Structural Repertoire of HIV-1-Neutralizing Antibodies Targeting the CD4 Supersite in 14 Donors., Zhou T, Lynch RM, Chen L, Acharya P, Wu X, Doria-Rose NA, Joyce MG, Lingwood D, Soto C, Bailer RT, Ernandes MJ, Kong R, Longo NS, Louder MK, McKee K, O'Dell S, Schmidt SD, Tran L, Yang Z, Druz A, Luongo TS, Moquin S, Srivatsan S, Yang Y, Zhang B, Zheng A, Pancera M, Kirys T, Georgiev IS, Gindin T, Peng HP, Yang AS, Mullikin JC, Gray MD, Stamatatos L, Burton DR, Koff WC, Cohen MS, Haynes BF, Casazza JP, Connors M, Corti D, Lanzavecchia A, Sattentau QJ, Weiss RA, West AP Jr, Bjorkman PJ, Scheid JF, Nussenzweig MC, Shapiro L, Mascola JR, Kwong PD, Cell. 2015 Jun 4;161(6):1280-92. doi: 10.1016/j.cell.2015.05.007. Epub 2015 May, 21. PMID:26004070

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (542 Kb) [Save to disk] Biological Unit Coordinates (4ydl.pdb1.gz) 269 Kb Biological Unit Coordinates (4ydl.pdb2.gz) 269 Kb LPC: Ligand-Protein Contacts for 4YDL CSU: Contacts of Structural Units for 4YDL Structure Factors (1386 Kb) Retrieve 4YDL in mmCIF format [Save to disk] Re-refined 4ydl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4YDL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ydl] [4ydl_A] [4ydl_B] [4ydl_C] [4ydl_G] [4ydl_H] [4ydl_L] SWISS-PROT database: Domains found in 4YDL: [IG_like] [IGv ] by SMART

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