4YDM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 4AJ, 4AK enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A
  • hormone activity


    • Primary referenceA Fluorogenic Aryl Fluorosulfate for Intraorganellar Transthyretin Imaging in Living Cells and in Caenorhabditis elegans., Baranczak A, Liu Y, Connelly S, Du WG, Greiner ER, Genereux JC, Wiseman RL, Eisele YS, Bradbury NC, Dong J, Noodleman L, Sharpless KB, Wilson IA, Encalada SE, Kelly JW, J Am Chem Soc. 2015 Jun 17;137(23):7404-14. doi: 10.1021/jacs.5b03042. Epub 2015 , Jun 8. PMID:26051248
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (4ydm.pdb1.gz) 173 Kb
  • LPC: Ligand-Protein Contacts for 4YDM
  • CSU: Contacts of Structural Units for 4YDM
  • Structure Factors (3464 Kb)
  • Retrieve 4YDM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YDM from S2C, [Save to disk]
  • Re-refined 4ydm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YDM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ydm] [4ydm_A] [4ydm_B]
  • SWISS-PROT database:
  • Domain found in 4YDM: [TR_THY ] by SMART

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