4YDQ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ANP, HFG, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of Prolyl-tRNA Synthetase-Halofuginone Complex Provides Basis for Development of Drugs against Malaria and Toxoplasmosis., Jain V, Yogavel M, Oshima Y, Kikuchi H, Touquet B, Hakimi MA, Sharma A, Structure. 2015 May 5;23(5):819-29. doi: 10.1016/j.str.2015.02.011. Epub 2015 Mar, 26. PMID:25817387
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (4ydq.pdb1.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 4YDQ
  • CSU: Contacts of Structural Units for 4YDQ
  • Structure Factors (2830 Kb)
  • Retrieve 4YDQ in mmCIF format [Save to disk]
  • Re-refined 4ydq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YDQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ydq] [4ydq_A] [4ydq_B]
  • SWISS-PROT database:
  • Domain found in 4YDQ: [ProRS-C_1 ] by SMART

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