4YDX date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand PT, SO4, TCE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin., Shabalin I, Dauter Z, Jaskolski M, Minor W, Wlodawer A, Acta Crystallogr D Biol Crystallogr. 2015 Sep 1;71(Pt 9):1965-79. doi:, 10.1107/S139900471500629X. Epub 2015 Aug 28. PMID:26327386
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (4ydx.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 4YDX
  • CSU: Contacts of Structural Units for 4YDX
  • Structure Factors (166 Kb)
  • Retrieve 4YDX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YDX from S2C, [Save to disk]
  • Re-refined 4ydx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YDX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ydx] [4ydx_A]
  • SWISS-PROT database:

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