4YFK date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 4C6, MG, ZN enzyme
Gene ECE24377A ; ECE24377A ; ECE24377A ; ECE24377A
Gene
Ontology
ChainFunctionProcessComponent
B, G, H, A


C, I


D, J


E, K


F, L
  • bacterial sigma factor activ...


    • Primary referenceX-ray Crystal Structures of Escherichia coli RNA Polymerase with Switch Region Binding Inhibitors Enable Rational Design of Squaramides with an Improved Fraction Unbound to Human Plasma Protein., Molodtsov V, Fleming PR, Eyermann CJ, Ferguson AD, Foulk MA, McKinney DC, Masse CE, Buurman ET, Murakami KS, J Med Chem. 2015 Mar 23. PMID:25798859
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2356 Kb) [Save to disk]
  • Biological Unit Coordinates (4yfk.pdb1.gz) 1191 Kb
  • Biological Unit Coordinates (4yfk.pdb2.gz) 1163 Kb
  • LPC: Ligand-Protein Contacts for 4YFK
  • CSU: Contacts of Structural Units for 4YFK
  • Structure Factors (2045 Kb)
  • Retrieve 4YFK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YFK from S2C, [Save to disk]
  • Re-refined 4yfk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YFK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yfk] [4yfk_A] [4yfk_B] [4yfk_C] [4yfk_D] [4yfk_E] [4yfk_F] [4yfk_G] [4yfk_H] [4yfk_I] [4yfk_J] [4yfk_K] [4yfk_L]
  • SWISS-PROT database:
  • Domains found in 4YFK: [RNA_pol_Rpb6] [RPOLA_N] [RPOLD ] by SMART

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