4YHZ Crystal structure of 304M3-B Fab in complex with H3K4me3 peptide date
authors Hattori, T., Dementieva, I.S., Montano, S.P., Koide, S.
compound source
symmetry
R_factor
R_Free 0.2129
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand GOL, M3L, SO4 enzyme
Primary referenceAntigen clasping by two antigen-binding sites of an exceptionally specific antibody for histone methylation., Hattori T, Lai D, Dementieva IS, Montano SP, Kurosawa K, Zheng Y, Akin LR, Swist-Rosowska KM, Grzybowski AT, Koide A, Krajewski K, Strahl BD, Kelleher NL, Ruthenburg AJ, Koide S, Proc Natl Acad Sci U S A. 2016 Feb 9. pii: 201522691. PMID:26862167
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (4yhz.pdb1.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 4YHZ
  • CSU: Contacts of Structural Units for 4YHZ
  • Structure Factors (619 Kb)
  • Retrieve 4YHZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YHZ from S2C, [Save to disk]
  • Re-refined 4yhz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YHZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4YHZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yhz_H] [4yhz_L] [4yhz_P] [4yhz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4YHZ: [IG_like] [IGv ] by SMART
  • Other resources with information on 4YHZ
  • Community annotation for 4YHZ at PDBWiki (http://pdbwiki.org)

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