4YI8 Crystal structure of non-myristoylated E153A recoverin at 1.2 A resolution with calcium ions bound to EF-hands 2 and 3 date
authors Kumar, R.Prem., Ranaghan, M.J., Oprian, D.D.
compound source
symmetry
R_factor
R_Free 0.1401
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.20
ligand CA, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structure of Recoverin with Calcium Ions Bound to Both Functional EF-Hands., Kumar RP, Ranaghan MJ, Ganjei AY, Oprian DD, Biochemistry. 2015 Nov 19. PMID:26584024
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (4yi8.pdb1.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 4YI8
  • CSU: Contacts of Structural Units for 4YI8
  • Structure Factors (3856 Kb)
  • Retrieve 4YI8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YI8 from S2C, [Save to disk]
  • Re-refined 4yi8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YI8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YI8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yi8_A] [4yi8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4YI8: [EFh ] by SMART
    • Other resources with information on 4YI8
  • Community annotation for 4YI8 at PDBWiki (http://pdbwiki.org)

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