4YK4 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
E, A


Primary referenceViral receptor-binding site antibodies with diverse germline origins., Schmidt AG, Therkelsen MD, Stewart S, Kepler TB, Liao HX, Moody MA, Haynes BF, Harrison SC, Cell. 2015 May 21;161(5):1026-34. doi: 10.1016/j.cell.2015.04.028. Epub 2015 May , 7. PMID:25959776
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (408 Kb) [Save to disk]
  • Biological Unit Coordinates (4yk4.pdb1.gz) 204 Kb
  • Biological Unit Coordinates (4yk4.pdb2.gz) 202 Kb
  • LPC: Ligand-Protein Contacts for 4YK4
  • CSU: Contacts of Structural Units for 4YK4
  • Structure Factors (767 Kb)
  • Retrieve 4YK4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YK4 from S2C, [Save to disk]
  • Re-refined 4yk4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YK4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yk4] [4yk4_A] [4yk4_B] [4yk4_C] [4yk4_E] [4yk4_Y] [4yk4_Z]
  • SWISS-PROT database:
  • Domains found in 4YK4: [IG_like] [IGv ] by SMART

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