4YM3 Crystal structure of the human galectin-4 C-terminal carbohydrate recognition domain in complex with lactose date
authors Bum-Erdene, K., Blanchard, H.
compound source
symmetry
R_factor
R_Free 0.1959
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.89
ligand BGC, GAL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural characterisation of human galectin-4 C-terminal domain -elucidating the molecular basis for recognition of glycosphingolipids, sulfated saccharides and blood group antigens., Bum-Erdene K, Leffler H, Nilsson UJ, Blanchard H, FEBS J. 2015 Jun 16. doi: 10.1111/febs.13348. PMID:26077389
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (4ym3.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (4ym3.pdb2.gz) 25 Kb
  • Biological Unit Coordinates (4ym3.pdb3.gz) 26 Kb
  • Biological Unit Coordinates (4ym3.pdb4.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 4YM3
  • CSU: Contacts of Structural Units for 4YM3
  • Structure Factors (2472 Kb)
  • Retrieve 4YM3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YM3 from S2C, [Save to disk]
  • Re-refined 4ym3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YM3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YM3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ym3_A] [4ym3_C] [4ym3_D] [4ym3_B] [4ym3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4YM3: [GLECT] [Gal-bind_lectin ] by SMART
    • Other resources with information on 4YM3
  • Community annotation for 4YM3 at PDBWiki (http://pdbwiki.org)

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