4YMJ	(R)-2-Phenylpyrrolidine Substitute Imidazopyridazines: a New Class of Potent and Selective Pan-TRK Inhibitors	date
authors	Kreusch, A., Rucker, P., Molteni, V., Loren, J.
compound		source
symmetry		R_factor R_Free 0.1993
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.00
ligand	4EJ, CL, GOL, SEP	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	(R)-2-Phenylpyrrolidine Substituted Imidazopyridazines: A New Class of Potent and Selective Pan-TRK Inhibitors., Choi HS, Rucker PV, Wang Z, Fan Y, Albaugh P, Chopiuk G, Gessier F, Sun F, Adrian F, Liu G, Hood T, Li N, Jia Y, Che J, McCormack S, Li A, Li J, Steffy A, Culazzo A, Tompkins C, Phung V, Kreusch A, Lu M, Hu B, Chaudhary A, Prashad M, Tuntland T, Liu B, Harris J, Seidel HM, Loren J, Molteni V, ACS Med Chem Lett. 2015 Mar 16;6(5):562-7. doi: 10.1021/acsmedchemlett.5b00050., eCollection 2015 May 14. PMID:26005534

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (201 Kb) [Save to disk] Biological Unit Coordinates (4ymj.pdb1.gz) 98 Kb Biological Unit Coordinates (4ymj.pdb2.gz) 100 Kb LPC: Ligand-Protein Contacts for 4YMJ CSU: Contacts of Structural Units for 4YMJ Structure Factors (954 Kb) Retrieve 4YMJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4YMJ from S2C, [Save to disk] Re-refined 4ymj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4YMJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4YMJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4YMJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ymj_B] [4ymj_A] [4ymj] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4YMJ: [TyrKc ] by SMART

Other resources with information on 4YMJ

Community annotation for 4YMJ at PDBWiki (http://pdbwiki.org)

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