4YPE ASH1L SET domain H2193F mutant in complex with S-adenosyl methionine (SAM) date
authors Rogawski, D.S., Ndoj, J., Cho, H.J., Maillard, I., Grembecka, J., Cierpicki, T.
compound source
symmetry
R_factor
R_Free 0.2625
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand SAM, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceTwo Loops Undergoing Concerted Dynamics Regulate the Activity of the ASH1L Histone Methyltransferase., Rogawski DS, Ndoj J, Cho HJ, Maillard I, Grembecka J, Cierpicki T, Biochemistry. 2015 Aug 25. PMID:26292256
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (4ype.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (4ype.pdb2.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 4YPE
  • CSU: Contacts of Structural Units for 4YPE
  • Structure Factors (436 Kb)
  • Retrieve 4YPE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YPE from S2C, [Save to disk]
  • Re-refined 4ype structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YPE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YPE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ype] [4ype_B] [4ype_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4YPE: [AWS] [PostSET] [SET ] by SMART
    • Other resources with information on 4YPE
  • Community annotation for 4YPE at PDBWiki (http://pdbwiki.org)

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