4YPQ		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	4F1, MG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Identification of an allosteric binding site for RORgammat inhibition., Scheepstra M, Leysen S, van Almen GC, Miller JR, Piesvaux J, Kutilek V, van Eenennaam H, Zhang H, Barr K, Nagpal S, Soisson SM, Kornienko M, Wiley K, Elsen N, Sharma S, Correll CC, Trotter BW, van der Stelt M, Oubrie A, Ottmann C, Parthasarathy G, Brunsveld L, Nat Commun. 2015 Dec 7;6:8833. doi: 10.1038/ncomms9833. PMID:26640126

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (4ypq.pdb1.gz) 44 Kb LPC: Ligand-Protein Contacts for 4YPQ CSU: Contacts of Structural Units for 4YPQ Structure Factors (913 Kb) Retrieve 4YPQ in mmCIF format [Save to disk] Re-refined 4ypq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4YPQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ypq] [4ypq_A] SWISS-PROT database: Domain found in 4YPQ: [HOLI ] by SMART

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