4YQR Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds date
authors Elkins, P.A., Bonnette, W.G., Stuckey, J.A.
compound source
symmetry
R_factor
R_Free 0.1954
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand 4HQ enzyme
Gene HI
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (4yqr.pdb1.gz) 165 Kb
  • LPC: Ligand-Protein Contacts for 4YQR
  • CSU: Contacts of Structural Units for 4YQR
  • Structure Factors (504 Kb)
  • Retrieve 4YQR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YQR from S2C, [Save to disk]
  • Re-refined 4yqr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YQR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YQR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yqr_A] [4yqr]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4YQR
  • Community annotation for 4YQR at PDBWiki (http://pdbwiki.org)

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