4YUM Multiconformer synchrotron model of CypA at 300 K date
authors Keedy, D.A., Kenner, L.R., Warkentin, M., Woldeyes, R.A., Thompson, M.C., Brewster, A.S., Benschoten, A.H.Van., Baxter, E.L., Hopkins, J.B., Uervirojnangkoorn, M., McPhillips, S.E., Song, J., Mori, R.A., Holton, J.M., Weis, W.I., Brunger, A.T., Soltis, M., Lemke, H., Gonzalez, A., Sauter, N.K., Cohen, A.E., Bedem, H.van.den., Thorne, R.E., Fraser, J.S.
compound source
symmetry
R_factor
R_Free 0.1437
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.50
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference., Keedy DA, Kenner LR, Warkentin M, Woldeyes RA, Hopkins JB, Thompson MC, Brewster AS, Van Benschoten AH, Baxter EL, Uervirojnangkoorn M, McPhillips SE, Song J, Alonso-Mori R, Holton JM, Weis WI, Brunger AT, Soltis SM, Lemke H, Gonzalez A, Sauter NK, Cohen AE, van den Bedem H, Thorne RE, Fraser JS, Elife. 2015 Sep 30;4. doi: 10.7554/eLife.07574. PMID:26422513
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (4yum.pdb1.gz) 116 Kb
  • CSU: Contacts of Structural Units for 4YUM
  • Structure Factors (274 Kb)
  • Retrieve 4YUM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YUM from S2C, [Save to disk]
  • Re-refined 4yum structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YUM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YUM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yum] [4yum_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4YUM
  • Community annotation for 4YUM at PDBWiki (http://pdbwiki.org)

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