4YXR CRYSTAL STRUCTURE OF PKA IN COMPLEX WITH inhibitor. date
authors Schiffer, A., Wendt, K.U.
compound source
symmetry
R_factor
R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand 0RW, SEP, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


I


Primary referenceA Combination of Spin Diffusion Methods for the Determination of Protein-Ligand Complex Structural Ensembles., Pilger J, Mazur A, Monecke P, Schreuder H, Elshorst B, Bartoschek S, Langer T, Schiffer A, Krimm I, Wegstroth M, Lee D, Hessler G, Wendt KU, Becker S, Griesinger C, Angew Chem Int Ed Engl. 2015 Apr 15. doi: 10.1002/anie.201500671. PMID:25877959
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (4yxr.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 4YXR
  • CSU: Contacts of Structural Units for 4YXR
  • Structure Factors (705 Kb)
  • Retrieve 4YXR in mmCIF format [Save to disk]
  • Re-refined 4yxr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YXR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YXR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4YXR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yxr] [4yxr_A] [4yxr_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4YXR: [S_TK_X] [S_TKc ] by SMART
    • Other resources with information on 4YXR
  • Community annotation for 4YXR at PDBWiki (http://pdbwiki.org)

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