4Z3A Acetate-free structure of the enzyme-product complex resulting from TDG action on a GU mismatch date
authors Pozharski, E., Malik, S.S., Drohat, A.C.
compound source
symmetry
R_factor
R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.72
ligand AAB, ORP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThymine DNA glycosylase exhibits negligible affinity for nucleobases that it removes from DNA., Malik SS, Coey CT, Varney KM, Pozharski E, Drohat AC, Nucleic Acids Res. 2015 Sep 10. pii: gkv890. PMID:26358812
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (4z3a.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 4Z3A
  • CSU: Contacts of Structural Units for 4Z3A
  • Structure Factors (2356 Kb)
  • Retrieve 4Z3A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Z3A from S2C, [Save to disk]
  • Re-refined 4z3a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Z3A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Z3A
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z3a_A] [4z3a_D] [4z3a] [4z3a_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4Z3A: [UDG] [UreE_C ] by SMART
    • Other resources with information on 4Z3A
  • Community annotation for 4Z3A at PDBWiki (http://pdbwiki.org)

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