4Z47	Structure of the enzyme-product complex resulting from TDG action on a GU mismatch in the presence of excess base	date
authors	Pozharski, E., Malik, S.S., Drohat, A.C.
compound		source
symmetry		R_factor R_Free 0.1953
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.45
ligand	ACY, EDO, ORP	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Thymine DNA glycosylase exhibits negligible affinity for nucleobases that it removes from DNA., Malik SS, Coey CT, Varney KM, Pozharski E, Drohat AC, Nucleic Acids Res. 2015 Sep 10. pii: gkv890. PMID:26358812

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk] Biological Unit Coordinates (4z47.pdb1.gz) 125 Kb LPC: Ligand-Protein Contacts for 4Z47 CSU: Contacts of Structural Units for 4Z47 Structure Factors (3567 Kb) Retrieve 4Z47 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4Z47 from S2C, [Save to disk] Re-refined 4z47 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4Z47 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4Z47

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4z47] [4z47_A] [4z47_C] [4z47_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4Z47: [UDG] [UreE_C ] by SMART

Other resources with information on 4Z47

Community annotation for 4Z47 at PDBWiki (http://pdbwiki.org)

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