4Z6E Structure of human DNA polymerase beta 279NA mutant complexed with G in the template base paired with incoming non-hydrolyzable TTP and MANGANESE date
authors Koag, M.C., Lee, S.
compound source
symmetry
R_factor
R_Free 0.2482
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.75
ligand 1FZ, MN, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInsights into the effect of minor groove interactions and metal cofactors on mutagenic replication by human DNA polymerase beta., Koag MC, Lee S, Biochem J. 2018 Feb 9;475(3):571-585. doi: 10.1042/BCJ20170787. PMID:29301983
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (4z6e.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 4Z6E
  • CSU: Contacts of Structural Units for 4Z6E
  • Structure Factors (104 Kb)
  • Retrieve 4Z6E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Z6E from S2C, [Save to disk]
  • Re-refined 4z6e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Z6E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Z6E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z6e_D] [4z6e_T] [4z6e] [4z6e_P] [4z6e_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4Z6E: [HhH1] [POLXc ] by SMART
    • Other resources with information on 4Z6E
  • Community annotation for 4Z6E at PDBWiki (http://pdbwiki.org)

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