4Z6H Crystal structure of BRD9 bromodomain in complex with a valerolactam quinolone ligand date
authors Tallant, C., SGC, Structural.Genomics.Consortium., Clark, P.G.K., Vieira, L.C.C., Krojer, T., Nunez-Alonso, G., Picaud, S., Fedorov, O., Dixon, D.J., Delft, F.von., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Brennan, P.E., Knapp, S.
compound source
symmetry
R_factor
R_Free 0.27084
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand 4L2 enzyme
Primary referenceLP99: Discovery and Synthesis of the First Selective BRD7/9 Bromodomain Inhibitor., Clark PG, Vieira LC, Tallant C, Fedorov O, Singleton DC, Rogers CM, Monteiro OP, Bennett JM, Baronio R, Muller S, Daniels DL, Mendez J, Knapp S, Brennan PE, Dixon DJ, Angew Chem Int Ed Engl. 2015 May 18;54(21):6217-21. doi: 10.1002/anie.201501394. , Epub 2015 Apr 13. PMID:25864491
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (4z6h.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (4z6h.pdb2.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 4Z6H
  • CSU: Contacts of Structural Units for 4Z6H
  • Structure Factors (458 Kb)
  • Retrieve 4Z6H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Z6H from S2C, [Save to disk]
  • Re-refined 4z6h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Z6H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Z6H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Z6H, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z6h_B] [4z6h_A] [4z6h]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Z6H: [BROMO ] by SMART
    • Other resources with information on 4Z6H
  • Community annotation for 4Z6H at PDBWiki (http://pdbwiki.org)

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