4Z7B Structure of the enzyme-product complex resulting from TDG action on a GfC mismatch date
authors Pozharski, E., Malik, S.S., Drohat, A.C.
compound source
symmetry
R_factor
R_Free 0.2325
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.02
ligand ACY, EDO, ORP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThymine DNA glycosylase exhibits negligible affinity for nucleobases that it removes from DNA., Malik SS, Coey CT, Varney KM, Pozharski E, Drohat AC, Nucleic Acids Res. 2015 Sep 10. pii: gkv890. PMID:26358812
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (4z7b.pdb1.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 4Z7B
  • CSU: Contacts of Structural Units for 4Z7B
  • Structure Factors (1493 Kb)
  • Retrieve 4Z7B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Z7B from S2C, [Save to disk]
  • Re-refined 4z7b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Z7B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Z7B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z7b_D] [4z7b_A] [4z7b] [4z7b_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4Z7B: [UDG] [UreE_C ] by SMART
    • Other resources with information on 4Z7B
  • Community annotation for 4Z7B at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science