4Z7V L3-12 complex date
authors Petersen, J., Rossjohn, J., Reid, H.H., Koning, F.
compound source
symmetry
R_factor
R_Free 0.2259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.65
ligand FUC, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceDeterminants of Gliadin-Specific T Cell Selection in Celiac Disease., Petersen J, van Bergen J, Loh KL, Kooy-Winkelaar Y, Beringer DX, Thompson A, Bakker SF, Mulder CJ, Ladell K, McLaren JE, Price DA, Rossjohn J, Reid HH, Koning F, J Immunol. 2015 May 6. pii: 1500161. PMID:25948817
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (540 Kb) [Save to disk]
  • Biological Unit Coordinates (4z7v.pdb1.gz) 268 Kb
  • Biological Unit Coordinates (4z7v.pdb2.gz) 269 Kb
  • LPC: Ligand-Protein Contacts for 4Z7V
  • CSU: Contacts of Structural Units for 4Z7V
  • Structure Factors (1522 Kb)
  • Retrieve 4Z7V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Z7V from S2C, [Save to disk]
  • Re-refined 4z7v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Z7V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Z7V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Z7V, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z7v_E] [4z7v_I] [4z7v_J] [4z7v_D] [4z7v_C] [4z7v_F] [4z7v_B] [4z7v] [4z7v_H] [4z7v_G] [4z7v_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4Z7V: [IG_like] [IGc1] [IGv] [MHC_II_alpha] [MHC_II_beta ] by SMART
    • Other resources with information on 4Z7V
  • Community annotation for 4Z7V at PDBWiki (http://pdbwiki.org)

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