4ZAD Structure of C. dubliensis Fdc1 with the prenylated-flavin cofactor in the iminium form. date
authors Bailey, S.S., Leys, D.
compound source
symmetry
R_factor
R_Free 0.25569
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.46
ligand 4LU, K, MN enzyme
Gene CD36
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceNew cofactor supports alpha,beta-unsaturated acid decarboxylation via 1,3-dipolar cycloaddition., Payne KA, White MD, Fisher K, Khara B, Bailey SS, Parker D, Rattray NJ, Trivedi DK, Goodacre R, Beveridge R, Barran P, Rigby SE, Scrutton NS, Hay S, Leys D, Nature. 2015 Jun 25;522(7557):497-501. doi: 10.1038/nature14560. Epub 2015 Jun, 17. PMID:26083754
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (4zad.pdb1.gz) 166 Kb
  • LPC: Ligand-Protein Contacts for 4ZAD
  • CSU: Contacts of Structural Units for 4ZAD
  • Structure Factors (758 Kb)
  • Retrieve 4ZAD in mmCIF format [Save to disk]
  • Re-refined 4zad structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ZAD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ZAD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ZAD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zad] [4zad_A] [4zad_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4ZAD
  • Community annotation for 4ZAD at PDBWiki (http://pdbwiki.org)

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