4ZAD	Lyase	date	Apr 13, 2015
title	Structure Of C. Dubliensis Fdc1 With The Prenylated-Flavin C The Iminium Form.
authors	S.S.Bailey, D.Leys
compound		source
Molecule: Fdc1 Chain: A, B Engineered: Yes		Organism_scientific: Candida Dubliniensis Organism_common: Yeast Organism_taxid: 42374 Gene: Cd36_64160 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.205 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.970 64.550 96.050 90.00 91.07 90.00
method	X-Ray Diffraction	resolution	2.46 Å
ligand	4LU, K, MN	enzyme
Gene	CD36
Gene Ontology	Chain Function Process Component A, B
Primary reference	New cofactor supports alpha,beta-unsaturated acid decarboxylation via 1,3-dipolar cycloaddition., Payne KA, White MD, Fisher K, Khara B, Bailey SS, Parker D, Rattray NJ, Trivedi DK, Goodacre R, Beveridge R, Barran P, Rigby SE, Scrutton NS, Hay S, Leys D, Nature. 2015 Jun 25;522(7557):497-501. doi: 10.1038/nature14560. Epub 2015 Jun, 17. PMID:26083754

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk] Biological Unit Coordinates (4zad.pdb1.gz) 166 Kb LPC: Ligand-Protein Contacts for 4ZAD CSU: Contacts of Structural Units for 4ZAD Structure Factors (758 Kb) Retrieve 4ZAD in mmCIF format [Save to disk] Re-refined 4zad structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4ZAD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4ZAD

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4ZAD, from MSDmotif at EBI Fold representative 4zad from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4zad] [4zad_A] [4zad_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4ZAD

Community annotation for 4ZAD at PDBWiki (http://pdbwiki.org)

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