4ZC3 DNA binding domain of small terminase SF6 phage date
authors Antson, A.A., Chechik, M., Jenkins, H.T., Greive, S.J.
compound source
symmetry
R_factor
R_Free 0.2131
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.40
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDNA recognition for virus assembly through multiple sequence-independent interactions with a helix-turn-helix motif., Greive SJ, Fung HK, Chechik M, Jenkins HT, Weitzel SE, Aguiar PM, Brentnall AS, Glousieau M, Gladyshev GV, Potts JR, Antson AA, Nucleic Acids Res. 2015 Dec 15. pii: gkv1467. PMID:26673721
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (4zc3.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 4ZC3
  • Structure Factors (97 Kb)
  • Retrieve 4ZC3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZC3 from S2C, [Save to disk]
  • Re-refined 4zc3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZC3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZC3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j4zc3, region C:137-190,C:367-409 [Jmol] [rasmolscript] [script source]
  • Fold representative 4zc3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zc3] [4zc3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ZC3
  • Community annotation for 4ZC3 at PDBWiki (http://pdbwiki.org)

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