4ZIP HIV-1 wild Type protease with GRL-0648A (a isophthalamide-derived P2-Ligand) date
authors Wang, Y.F., Agniswamy, J., Weber, I.T.
compound source
symmetry
R_factor
R_Free 0.1545
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.11
ligand CL, G64, GOL, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure-based design, synthesis, X-ray studies, and biological evaluation of novel HIV-1 protease inhibitors containing isophthalamide-derived P2-ligands., Ghosh AK, Takayama J, Kassekert LA, Ella-Menye JR, Yashchuk S, Agniswamy J, Wang YF, Aoki M, Amano M, Weber IT, Mitsuya H, Bioorg Med Chem Lett. 2015 May 30. pii: S0960-894X(15)00526-0. doi:, 10.1016/j.bmcl.2015.05.052. PMID:26096678
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (4zip.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 4ZIP
  • CSU: Contacts of Structural Units for 4ZIP
  • Structure Factors (612 Kb)
  • Retrieve 4ZIP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZIP from S2C, [Save to disk]
  • Re-refined 4zip structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ZIP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ZIP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zip_B] [4zip_A] [4zip]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4ZIP
  • Community annotation for 4ZIP at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science