4ZM9 Crystal structure of circularly permuted human asparaginase-like protein 1 date
authors Li, W.Z., Zhang, Y.
compound source
symmetry
R_factor
R_Free 0.23331
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.51
ligand BME, DTT, FLC, GLY, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceIntramolecular Cleavage of the hASRGL1 Homodimer Occurs in Two Stages., Li W, Irani S, Crutchfield A, Hodge K, Matthews W, Patel P, Zhang YJ, Stone E, Biochemistry. 2016 Feb 16;55(6):960-9. doi: 10.1021/acs.biochem.5b01157. Epub, 2016 Feb 2. PMID:26780688
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (4zm9.pdb1.gz) 90 Kb
  • Biological Unit Coordinates (4zm9.pdb2.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 4ZM9
  • CSU: Contacts of Structural Units for 4ZM9
  • Structure Factors (1272 Kb)
  • Retrieve 4ZM9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZM9 from S2C, [Save to disk]
  • Re-refined 4zm9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ZM9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ZM9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zm9_B] [4zm9_C] [4zm9_D] [4zm9] [4zm9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4ZM9
  • Community annotation for 4ZM9 at PDBWiki (http://pdbwiki.org)

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