4ZQM Oxidoreductase date May 10, 2015
title Crystal Structure Of The Catalytic Domain Of The Inosine Mon Dehydrogenase From Mycobacterium Tuberculosis In The Comple And Nad
authors Y.Kim, N.Maltseva, M.Makowska-Grzyska, M.Gu, M.Kavitha, L.Hedstro W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: Inosine-5'-Monophosphate Dehydrogenase,Inosine-5' Monophosphate Dehydrogenase;
Chain: A
Fragment: Unp Residues 1-125 And 253-529 Linked By Linker (
Synonym: Impdh
Ec: 1.1.1.205,1.1.1.205
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis (Strain Atc H37rv);
Organism_taxid: 83332
Strain: Atcc 25618 H37rv
Gene: Guab, Guab2, Rv3411c, Mtcy78.17
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Gold
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: I 4
R_factor 0.160 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.154 88.154 85.512 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand NAD, XMP enzyme Oxidoreductase E.C.1.1.1.205 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMycobacterium tuberculosis IMPDH in Complexes with Substrates, Products and Antitubercular Compounds., Makowska-Grzyska M, Kim Y, Gorla SK, Wei Y, Mandapati K, Zhang M, Maltseva N, Modi G, Boshoff HI, Gu M, Aldrich C, Cuny GD, Hedstrom L, Joachimiak A, PLoS One. 2015 Oct 6;10(10):e0138976. doi: 10.1371/journal.pone.0138976., eCollection 2015. PMID:26440283
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (4zqm.pdb1.gz) 399 Kb
  • LPC: Ligand-Protein Contacts for 4ZQM
  • CSU: Contacts of Structural Units for 4ZQM
  • Structure Factors (302 Kb)
  • Retrieve 4ZQM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZQM from S2C, [Save to disk]
  • Re-refined 4zqm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZQM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZQM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ZQM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zqm_A] [4zqm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ZQM: [IMPDH ] by SMART
  • Other resources with information on 4ZQM
  • Community annotation for 4ZQM at PDBWiki (http://pdbwiki.org)

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