4ZTU Structural basis for processivity and antiviral drug toxicity in human mitochondrial DNA replicase date
authors Szymanski, M.R., Kuznestov, V.B., Shumate, C.K., Meng, Q., Lee, Y.S., Patel, G., Patel, S.S., Yin, Y.W.
compound source
symmetry
R_factor
R_Free 0.3164
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.30
ligand DCT, DOC, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA-directed DNA polymerase ...
  • 3'-5' exonuclease activity


  • C, B
  • DNA-directed DNA polymerase ...


  • Primary referenceStructural basis for processivity and antiviral drug toxicity in human mitochondrial DNA replicase., Szymanski MR, Kuznetsov VB, Shumate C, Meng Q, Lee YS, Patel G, Patel S, Yin YW, EMBO J. 2015 Jul 14;34(14):1959-70. doi: 10.15252/embj.201591520. Epub 2015 Jun, 8. PMID:26056153
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (300 Kb) [Save to disk]
  • Biological Unit Coordinates (4ztu.pdb1.gz) 291 Kb
  • LPC: Ligand-Protein Contacts for 4ZTU
  • CSU: Contacts of Structural Units for 4ZTU
  • Structure Factors (461 Kb)
  • Retrieve 4ZTU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZTU from S2C, [Save to disk]
  • Re-refined 4ztu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZTU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZTU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ztu_C] [4ztu_A] [4ztu_T] [4ztu_P] [4ztu_B] [4ztu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ZTU: [POLAc ] by SMART
  • Other resources with information on 4ZTU
  • Community annotation for 4ZTU at PDBWiki (http://pdbwiki.org)

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