5A31 Structure of the human APC-Cdh1-Hsl1-UbcH10 complex. date
authors Chang, L., Zhang, Z., Yang, J., Mclaughlin, S.H., Barford, D.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.30
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C, P


D


E


F, H


I


K, J


L


M


N


O


R


W, G


Y, X


Primary referenceAtomic structure of the APC/C and its mechanism of protein ubiquitination., Chang L, Zhang Z, Yang J, McLaughlin SH, Barford D, Nature. 2015 Jun 25;522(7557):450-4. doi: 10.1038/nature14471. Epub 2015 Jun 15. PMID:26083744
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1400 Kb) [Save to disk]
  • Biological Unit Coordinates (5a31.pdb1.gz) 1362 Kb
  • LPC: Ligand-Protein Contacts for 5A31
  • CSU: Contacts of Structural Units for 5A31
  • Retrieve 5A31 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A31 from S2C, [Save to disk]
    • View 5A31 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5A31
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a31_L] [5a31_K] [5a31_P] [5a31_W] [5a31_A] [5a31_X] [5a31_F] [5a31_G] [5a31] [5a31_V] [5a31_Q] [5a31_Y] [5a31_M] [5a31_J] [5a31_H] [5a31_T] [5a31_O] [5a31_I] [5a31_R] [5a31_N] [5a31_D] [5a31_C] [5a31_B] [5a31_U] [5a31_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5A31: [APC10] [APC2] [CULLIN] [RING] [TPR] [UBCc] [WD40 ] by SMART
    • Other resources with information on 5A31
  • Community annotation for 5A31 at PDBWiki (http://pdbwiki.org)

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