5A39 Structure of Rad14 in complex with cisplatin containing DNA date
authors Koch, S.C., Kuper, J., Gasteiger, K.L., Wichlein, N., Strasser, R., Eisen, D., Geiger, S., Schneider, S., Kisker, C., Carell, T.
compound source
symmetry
R_factor
R_Free 0.25554
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand CPT, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural insights into the recognition of cisplatin and AAF-dG lesion by Rad14 (XPA)., Koch SC, Kuper J, Gasteiger KL, Simon N, Strasser R, Eisen D, Geiger S, Schneider S, Kisker C, Carell T, Proc Natl Acad Sci U S A. 2015 Jun 22. pii: 201508509. PMID:26100901
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (5a39.pdb1.gz) 166 Kb
  • Biological Unit Coordinates (5a39.pdb2.gz) 166 Kb
  • LPC: Ligand-Protein Contacts for 5A39
  • CSU: Contacts of Structural Units for 5A39
  • Structure Factors (85 Kb)
  • Retrieve 5A39 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A39 from S2C, [Save to disk]
  • Re-refined 5a39 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5A39 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5A39
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a39] [5a39_E] [5a39_C] [5a39_G] [5a39_A] [5a39_B] [5a39_F] [5a39_H] [5a39_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5A39
  • Community annotation for 5A39 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science