5A3N Crystal structure of human PLU-1 (JARID1B) in complex with KDOAM25a date
authors Srikannathasan, V., Johansson, C., Gileadi, C., Nuzzi, A., Ruda, G.F., Kopec, J., Delft, F.von., Arrowsmith, C.H., Bountra, C., Edwards, A., Brennan, P., Oppermann, U.
compound source
symmetry
R_factor
R_Free 0.20335
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand DMS, EDO, EPE, LQT, MN, PO4, ZN enzyme
Primary referencePotent and Selective KDM5 Inhibitor Stops Cellular Demethylation of H3K4me3 at Transcription Start Sites and Proliferation of MM1S Myeloma Cells., Tumber A, Nuzzi A, Hookway ES, Hatch SB, Velupillai S, Johansson C, Kawamura A, Savitsky P, Yapp C, Szykowska A, Wu N, Bountra C, Strain-Damerell C, Burgess-Brown NA, Ruda GF, Fedorov O, Munro S, England KS, Nowak RP, Schofield CJ, La Thangue NB, Pawlyn C, Davies F, Morgan G, Athanasou N, Muller S, Oppermann U, Brennan PE, Cell Chem Biol. 2017 Mar 16;24(3):371-380. doi: 10.1016/j.chembiol.2017.02.006., Epub 2017 Mar 2. PMID:28262558
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (5a3n.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 5A3N
  • CSU: Contacts of Structural Units for 5A3N
  • Structure Factors (3348 Kb)
  • Retrieve 5A3N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A3N from S2C, [Save to disk]
  • Re-refined 5a3n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5A3N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5A3N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a3n] [5a3n_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5A3N: [JmjC] [JmjN ] by SMART
    • Other resources with information on 5A3N
  • Community annotation for 5A3N at PDBWiki (http://pdbwiki.org)

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