OCA Atlas for 5A90

5A90

100K Neutron Ligand Free: Exploring the Mechanism of beta-Lactam Ring Protonation in the Class A beta-lactamase Acylation Mechanism Using Neutron and X-ray Crystallography

date

authors

Vandavasi, V.G., Weiss, K.L., Cooper, J.B., Erskine, P.T., Tomanicek, S.J., Ostermann, A., Schrader, T.E., Ginell, S.L., Coates, L.

compound

source

symmetry

R_factor

R_Free

0.2265

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

1.70

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Exploring the Mechanism of beta-Lactam Ring Protonation in the Class A beta-lactamase Acylation Mechanism Using Neutron and X-ray Crystallography., Vandavasi VG, Weiss KL, Cooper JB, Erskine PT, Tomanicek SJ, Ostermann A, Schrader TE, Ginell SL, Coates L, J Med Chem. 2015 Dec 2. PMID:26630115

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]

Biological Unit Coordinates (5a90.pdb1.gz) 83 Kb

CSU: Contacts of Structural Units for 5A90

Structure Factors (278 Kb)

Retrieve 5A90 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5A90 from S2C, [Save to disk]

View 5A90 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5A90

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5a90_A] [5a90]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 5A90

Community annotation for 5A90 at PDBWiki (http://pdbwiki.org)

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