5A9F Crystal structure of the Helicase domain of human DNA polymerase theta in complex with ADP date
authors Newman, J.A., Cooper, C.D.O., Aitkenhead, H., Pinkas, D.M., Kupinska, K., Burgess-Brown, N., Delft, F.von., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.
compound source
symmetry
R_factor
R_Free 0.2731
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.20
ligand ADP, K, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the Helicase Domain of DNA Polymerase Theta Reveals a Possible Role in the Microhomology-Mediated End-Joining Pathway., Newman JA, Cooper CD, Aitkenhead H, Gileadi O, Structure. 2015 Dec 1;23(12):2319-30. doi: 10.1016/j.str.2015.10.014. PMID:26636256
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (5a9f.pdb1.gz) 483 Kb
  • LPC: Ligand-Protein Contacts for 5A9F
  • CSU: Contacts of Structural Units for 5A9F
  • Structure Factors (1122 Kb)
  • Retrieve 5A9F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A9F from S2C, [Save to disk]
  • Re-refined 5a9f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5A9F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5A9F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a9f] [5a9f_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5A9F: [DEXDc] [HELICc ] by SMART
    • Other resources with information on 5A9F
  • Community annotation for 5A9F at PDBWiki (http://pdbwiki.org)

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