5AFO		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component B, A
Primary reference	Structural and adhesive properties of the long polar fimbriae protein LpfD from adherent-invasive Escherichia coli., Coppens F, Iyyathurai J, Ruer S, Fioravanti A, Taganna J, Vereecke L, De Greve H, Remaut H, Acta Crystallogr D Biol Crystallogr. 2015 Aug 1;71(Pt 8):1615-26. doi:, 10.1107/S1399004715009803. Epub 2015 Jul 28. PMID:26249343

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk] Biological Unit Coordinates (5afo.pdb1.gz) 117 Kb Biological Unit Coordinates (5afo.pdb2.gz) 117 Kb LPC: Ligand-Protein Contacts for 5AFO CSU: Contacts of Structural Units for 5AFO Structure Factors (1557 Kb) Retrieve 5AFO in mmCIF format [Save to disk] Re-refined 5afo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AFO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5afo] [5afo_A] [5afo_B] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---