5AFV date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand EDO, JH5 enzyme
Primary referencePharmacophore-Based Virtual Screening to Discover New Active Compounds for Human Choline Kinase alpha1., Serran-Aguilera L, Nuti R, Lopez-Cara LC, Mezo MA, Macchiarulo A, Entrena A, Hurtado-Guerrero R, Mol Inform. 2015 Jun;34(6-7):458-66. doi: 10.1002/minf.201400140. Epub 2015 Jun, 18. PMID:27490389
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (250 Kb) [Save to disk]
  • Biological Unit Coordinates (5afv.pdb1.gz) 244 Kb
  • LPC: Ligand-Protein Contacts for 5AFV
  • CSU: Contacts of Structural Units for 5AFV
  • Structure Factors (2352 Kb)
  • Retrieve 5AFV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AFV from S2C, [Save to disk]
  • Re-refined 5afv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5AFV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5afv] [5afv_A] [5afv_B]
  • SWISS-PROT database:

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