OCA Atlas for 5AKD

5AKD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ANP

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, L, K, D, G, H
I, A, E, B, F, J

Primary reference

MutS/MutL crystal structure reveals that the MutS sliding clamp loads MutL onto DNA., Groothuizen FS, Winkler I, Cristovao M, Fish A, Winterwerp HH, Reumer A, Marx AD, Hermans N, Nicholls RA, Murshudov GN, Lebbink JH, Friedhoff P, Sixma TK, Elife. 2015 Jul 11;4. doi: 10.7554/eLife.06744. PMID:26163658

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1966 Kb) [Save to disk]

Biological Unit Coordinates (5akd.pdb1.gz) 658 Kb

Biological Unit Coordinates (5akd.pdb2.gz) 660 Kb

Biological Unit Coordinates (5akd.pdb3.gz) 654 Kb

LPC: Ligand-Protein Contacts for 5AKD

CSU: Contacts of Structural Units for 5AKD

Structure Factors (593 Kb)

Retrieve 5AKD in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5AKD from S2C, [Save to disk]

Re-refined 5akd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AKD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5akd] [5akd_A] [5akd_B] [5akd_C] [5akd_D] [5akd_E] [5akd_F] [5akd_G] [5akd_H] [5akd_I] [5akd_J] [5akd_K] [5akd_L]

SWISS-PROT database:

Domains found in 5AKD: [DNA_mis_repair] [HATPase_c] [MUTSac] [MUTSd ] by SMART

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