5AKF date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ACT, CL, MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
I, A, E
  • nuclease activity
  • endonuclease activity


    • Primary referenceEngineering a nickase on the homing endonuclease I-DmoI scaffold., Molina R, Marcaida MJ, Redondo P, Marenchino M, Duchateau P, D'Abramo M, Montoya G, Prieto J, J Biol Chem. 2015 Jun 4. pii: jbc.M115.658666. PMID:26045557
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (329 Kb) [Save to disk]
  • Biological Unit Coordinates (5akf.pdb1.gz) 108 Kb
  • Biological Unit Coordinates (5akf.pdb2.gz) 107 Kb
  • Biological Unit Coordinates (5akf.pdb3.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 5AKF
  • CSU: Contacts of Structural Units for 5AKF
  • Structure Factors (2941 Kb)
  • Retrieve 5AKF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AKF from S2C, [Save to disk]
  • Re-refined 5akf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5AKF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5akf] [5akf_A] [5akf_B] [5akf_C] [5akf_D] [5akf_E] [5akf_F] [5akf_G] [5akf_H] [5akf_I] [5akf_J] [5akf_K] [5akf_L]
  • SWISS-PROT database:

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science