5AKM		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	ACT, MG	enzyme
Gene Ontology	Chain Function Process Component K, F, A nuclease activity endonuclease activity
Primary reference	Engineering a nickase on the homing endonuclease I-DmoI scaffold., Molina R, Marcaida MJ, Redondo P, Marenchino M, Duchateau P, D'Abramo M, Montoya G, Prieto J, J Biol Chem. 2015 Jun 4. pii: jbc.M115.658666. PMID:26045557

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (313 Kb) [Save to disk] Biological Unit Coordinates (5akm.pdb1.gz) 103 Kb Biological Unit Coordinates (5akm.pdb2.gz) 103 Kb Biological Unit Coordinates (5akm.pdb3.gz) 105 Kb LPC: Ligand-Protein Contacts for 5AKM CSU: Contacts of Structural Units for 5AKM Structure Factors (764 Kb) Retrieve 5AKM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5AKM from S2C, [Save to disk] Re-refined 5akm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AKM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5akm] [5akm_A] [5akm_B] [5akm_C] [5akm_D] [5akm_E] [5akm_F] [5akm_G] [5akm_H] [5akm_I] [5akm_J] [5akm_K] [5akm_L] [5akm_M] [5akm_N] [5akm_O] SWISS-PROT database:

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