5AL8 Transport Protein date Mar 06, 2015
title Transthyretin Binding Heterogeneity And Anti-Amyloidogenic A Natural Polyphenols And Their Metabolites: Daidzein-7-O- Gl
authors P.Florio, C.Foll, M.Cianci, D.Del Rio, G.Zanotti, R.Berni
compound source
Molecule: Transthyretin
Chain: A, B
Fragment: Unp Residues 21-147
Synonym: Attr, Prealbumin, Tbpa
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11b
symmetry Space Group: P 21 21 2
R_factor 0.169 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.062 84.879 63.549 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand D75 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • hormone activity


    • Primary referenceTransthyretin Binding Heterogeneity and Anti-amyloidogenic Activity of Natural Polyphenols and their Metabolites., Florio P, Folli C, Cianci M, Del Rio D, Zanotti G, Berni R, J Biol Chem. 2015 Oct 14. pii: jbc.M115.690172. PMID:26468275
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (5al8.pdb1.gz) 163 Kb
  • LPC: Ligand-Protein Contacts for 5AL8
  • CSU: Contacts of Structural Units for 5AL8
  • Structure Factors (655 Kb)
  • Retrieve 5AL8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AL8 from S2C, [Save to disk]
  • Re-refined 5al8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5AL8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5AL8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5al8] [5al8_A] [5al8_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5AL8: [TR_THY ] by SMART
    • Other resources with information on 5AL8
  • Community annotation for 5AL8 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science