5AN9 Translation date Sep 06, 2015
title Mechanism Of Eif6 Release From The Nascent 60s Ribosomal Sub
authors F.Weis, E.Giudice, M.Churcher, L.Jin, C.Hilcenko, C.C.Wong, D.Tray R.R.Kay, A.J.Warren
compound source
Molecule: 60s Ribosomal Protein L3
Chain: A
 Organism_scientific: Dictyostelium Discoideum
Organism_common: Slime Mold
Organism_taxid: 44689
Strain: Hm2917

Molecule: 60s Ribosomal Protein L9
Chain: B
Organism_scientific: Dictyostelium Discoideum
Organism_common: Slime Mold
Organism_taxid: 44689
Strain: Hm2917

Molecule: 60s Acidic Ribosomal Protein P0
Chain: C
Fragment: Unp Residues 1-205
Organism_scientific: Dictyostelium Discoideum
Organism_common: Slime Mold
Organism_taxid: 44689
Strain: Hm2917

Molecule: 60s Ribosomal Protein L12
Chain: D
Organism_scientific: Dictyostelium Discoideum
Organism_common: Slime Mold
Organism_taxid: 44689
Strain: Hm2917

Molecule: 60s Ribosomal Protein L23
Chain: E
Organism_scientific: Dictyostelium Discoideum
Organism_common: Slime Mold
Organism_taxid: 44689
Strain: Hm2917

Molecule: 60s Ribosomal Protein L10
Chain: F
Organism_scientific: Dictyostelium Discoideum
Organism_common: Slime Mold
Organism_taxid: 44689
Strain: Hm2917

Molecule: 60s Ribosomal Protein L24
Chain: G
Fragment: Unp Residues 1-69
Organism_scientific: Dictyostelium Discoideum
Organism_common: Slime Mold
Organism_taxid: 44689
Strain: Hm2917

Molecule: Ubiquitin-60s Ribosomal Protein L40
Chain: H
Fragment: Unp Residues 77-128
Synonym: Ubiquitin A-52 Residue Ribosomal Protein Fusion Pr Cep52;
Organism_scientific: Dictyostelium Discoideum
Organism_common: Slime Mold
Organism_taxid: 44689
Strain: Hm2917

Molecule: Eukaryotic Translation Initiation Factor 6
Chain: I
Fragment: Unp Residues 1-224
Synonym: Eif-6, Eif6
Other_details: Endogenous Protein
Organism_scientific: Dictyostelium Discoideum
Organism_common: Slime Mold
Organism_taxid: 44689
Strain: Hm2917

Molecule: Ribosome Maturation Protein Sbds
Chain: J
Synonym: Shwachman-Bodian-Diamond Syndrome Protein, Sbds
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: C41
Expression_system_vector_type: Plasmid
Expression_system_vector: Prseta

Molecule: 26s Ribosomal Rna
Chain: N
Organism_scientific: Dictyostelium Discoideum
Organism_common: Slime Mold
Organism_taxid: 44689
Strain: Hm2917
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E


F


H


I


J


Primary referenceMechanism of eIF6 release from the nascent 60S ribosomal subunit., Weis F, Giudice E, Churcher M, Jin L, Hilcenko C, Wong CC, Traynor D, Kay RR, Warren AJ, Nat Struct Mol Biol. 2015 Nov;22(11):914-9. doi: 10.1038/nsmb.3112. Epub 2015 Oct, 19. PMID:26479198
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (801 Kb) [Save to disk]
  • Biological Unit Coordinates (5an9.pdb1.gz) 786 Kb
  • CSU: Contacts of Structural Units for 5AN9
  • Retrieve 5AN9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AN9 from S2C, [Save to disk]
    • View 5AN9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5AN9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5an9_F] [5an9_I] [5an9_N] [5an9_B] [5an9_C] [5an9_G] [5an9_H] [5an9_D] [5an9_J] [5an9_E] [5an9_A] [5an9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5AN9: [RL11] [Ribosomal_L14] [Ribosomal_L40e] [eIF6 ] by SMART
    • Other resources with information on 5AN9
  • Community annotation for 5AN9 at PDBWiki (http://pdbwiki.org)

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