5APH	Transcription	date	Sep 16, 2015
title	Ligand Complex Of Rorg Lbd
authors	Y.Xue, A.Aagaard, F.Narjes
compound		source
Molecule: Nuclear Receptor Ror-Gamma Chain: A Fragment: Ligand Binding Domain, Unp Residues 265-507 Synonym: Nuclear Receptor Rzr-Gamma, Nuclear Receptor Subfa Group F Member 3, Rar-Related Orphan Receptor C, Retinoid-R Orphan Receptor-Gamma, Rorg; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Nuclear Receptor Coactivator 2 Chain: C Fragment: Unp Residues 686-697 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 41 21 2	R_factor 0.213 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.850 61.850 159.000 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.54 Å
ligand	DMS, VYI	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Benzoxazepines Achieve Potent Suppression of IL-17 Release in Human T-Helper 17 (T 17) Cells through an Induced-Fit Binding Mode to the Nuclear Receptor RORgamma., Olsson RI, Xue Y, von Berg S, Aagaard A, McPheat J, Hansson EL, Bernstrom J, Hansson P, Jirholt J, Grindebacke H, Leffler A, Chen R, Xiong Y, Ge H, Hansson TG, Narjes F, ChemMedChem. 2015 Nov 10. doi: 10.1002/cmdc.201500432. PMID:26553345

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (5aph.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 5APH CSU: Contacts of Structural Units for 5APH Structure Factors (771 Kb) Retrieve 5APH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5APH from S2C, [Save to disk] Re-refined 5aph structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5APH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5APH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5aph_C] [5aph] [5aph_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5APH: [HOLI ] by SMART

Other resources with information on 5APH

Community annotation for 5APH at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---