5AQH Chaperone date Sep 22, 2015
title Fragment-Based Screening Of Hsp70 Sheds Light On The Functio Of Atp-Binding Site Residues
authors A.M.Jones, I.M.Westwood, J.D.Osborne, T.P.Matthews, M.D.Cheesema M.G.Rowlands, F.Jeganathan, R.Burke, D.Lee, N.Kadi, M.Liu, M.Rich C.Mcandrew, N.Yahya, S.E.Dobson, K.Jones, P.Workman, I.Collins, R Montfort
compound source
Molecule: Heat Shock Cognate 71 Kda Protein
Chain: A
Fragment: Nucleotide Binding Domain, Residues 1-381
Synonym: Heat Shock 70 Kda Protein 8, Lipopolysaccharide-As Protein 1, Lap-1, Lps-Associated Protein 1;
Ec: 3.6.3.51
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Ai
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgex-6p-1

Molecule: Bag Family Molecular Chaperone Regulator 1
Chain: B
Fragment: Residues 222-334
Synonym: Bag-1, Bcl-2-Associated Athanogene 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Ai
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgex-6p-1
symmetry Space Group: C 1 2 1
R_factor 0.184 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.310 40.840 129.600 90.00 113.72 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand DMS, GOL, ZVO enzyme Hydrolase E.C.3.6.3.51 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceA fragment-based approach applied to a highly flexible target: Insights and challenges towards the inhibition of HSP70 isoforms., Jones AM, Westwood IM, Osborne JD, Matthews TP, Cheeseman MD, Rowlands MG, Jeganathan F, Burke R, Lee D, Kadi N, Liu M, Richards M, McAndrew C, Yahya N, Dobson SE, Jones K, Workman P, Collins I, van Montfort RL, Sci Rep. 2016 Oct 6;6:34701. doi: 10.1038/srep34701. PMID:27708405
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (5aqh.pdb1.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 5AQH
  • CSU: Contacts of Structural Units for 5AQH
  • Structure Factors (726 Kb)
  • Retrieve 5AQH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AQH from S2C, [Save to disk]
  • Re-refined 5aqh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AQH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AQH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aqh_B] [5aqh_A] [5aqh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5AQH: [BAG ] by SMART
  • Other resources with information on 5AQH
  • Community annotation for 5AQH at PDBWiki (http://pdbwiki.org)

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