5AVJ Hydrolase date Jun 17, 2015
title Crystal Structure Of Proteinase K From Engyodontium Album
authors M.Sugahara, K.Numata
compound source
Molecule: Proteinase K
Chain: A
Synonym: Endopeptidase K,Tritirachium Alkaline Proteinase
Ec: 3.4.21.64
 Organism_scientific: Engyodontium Album
Organism_taxid: 37998
symmetry Space Group: P 43 21 2
R_factor 0.163 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.549 67.549 107.083 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand CA, GOL, NO3 enzyme Hydrolase E.C.3.4.21.64 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (5avj.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 5AVJ
  • CSU: Contacts of Structural Units for 5AVJ
  • Structure Factors (443 Kb)
  • Retrieve 5AVJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AVJ from S2C, [Save to disk]
  • Re-refined 5avj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5AVJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5AVJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5avj] [5avj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5AVJ
  • Community annotation for 5AVJ at PDBWiki (http://pdbwiki.org)

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